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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe1G352400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 731aa MW: 80396.3 Da PI: 6.0882 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.8 | 2.4e-20 | 57 | 112 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k Aqcoe1G352400.1.p 57 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 112 688999***********************************************999 PP | |||||||
2 | START | 206.4 | 1.1e-64 | 247 | 469 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 ela +a++elv++a+++ep+W + e +n+de++++f+++ + +++ea+r+sg+v +++lve+l++++ qW++ + +a Aqcoe1G352400.1.p 247 ELAVAAMEELVRLAQLGEPLWERGLengfETLNEDEYMRTFPRGIGprpygYRTEASRESGIVMISHMNLVEILMNVG-QWTNIFStivsRA 337 57899******************999*****************999********************************.************* PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164 tl+v+s+g galq+m+ae+q+++plvp R+++f+Ry++++++g+w++vdvS+d+ ++ +v+R++++pSg+li++ +ng+skv Aqcoe1G352400.1.p 338 ITLDVLSTGvagncnGALQVMTAEYQVPTPLVPtRESLFLRYCKKHSEGVWAVVDVSIDHLRPAG---PVMRCRRRPSGCLIQEFPNGYSKV 426 **************************************************************975...7*********************** PP EEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 165 twvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 +wveh++++++ p h+l+++l++s+l +gak+wvatl+rqce+ Aqcoe1G352400.1.p 427 IWVEHIEVDDSRPvHNLYKQLIHSSLGFGAKKWVATLDRQCER 469 *****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 38 | 98 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.18E-20 | 44 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.989 | 54 | 114 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-19 | 55 | 118 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.88E-19 | 57 | 115 | No hit | No description |
Pfam | PF00046 | 5.8E-18 | 57 | 112 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 89 | 112 | IPR017970 | Homeobox, conserved site |
Gene3D | G3DSA:1.10.10.60 | 4.2E-4 | 99 | 142 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50848 | 45.97 | 238 | 472 | IPR002913 | START domain |
SuperFamily | SSF55961 | 8.93E-35 | 240 | 471 | No hit | No description |
CDD | cd08875 | 2.27E-118 | 242 | 468 | No hit | No description |
SMART | SM00234 | 3.5E-60 | 247 | 469 | IPR002913 | START domain |
Pfam | PF01852 | 7.7E-55 | 248 | 469 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.5E-5 | 307 | 461 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 5.13E-19 | 489 | 721 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 731 aa Download sequence Send to blast |
MFQRNVFDSH HNPLEMIPTT TEELGKIRDD DVDSKSGSEN LEGGSGDEQD PNQRPKKKRY 60 HRHTQHQIQE MESFFKECPH PDDKQRKELS RELGLEPLQV KFWFQNKRTQ MKTQQERHEN 120 SQLRAENEKL RAENMRYKEA LAGASCPTCG GPTVVDEMSF DEQNLRMENA RLREEIDRIS 180 SIAAKYVGKP MVSYPLMAPP IAPRGLDLSV GNYGMQPGLQ GGEVYGGPDL LRSVTGPSEA 240 EKPLVIELAV AAMEELVRLA QLGEPLWERG LENGFETLNE DEYMRTFPRG IGPRPYGYRT 300 EASRESGIVM ISHMNLVEIL MNVGQWTNIF STIVSRAITL DVLSTGVAGN CNGALQVMTA 360 EYQVPTPLVP TRESLFLRYC KKHSEGVWAV VDVSIDHLRP AGPVMRCRRR PSGCLIQEFP 420 NGYSKVIWVE HIEVDDSRPV HNLYKQLIHS SLGFGAKKWV ATLDRQCERL ASVLASNMPA 480 GDGGVITNNE GRRNMLKLAE RMVMSFCAGV SASTAHTWTS LTGSGGEDVR VMTRKSVDDP 540 GRPAGIVLSA ATSFWLPVVP KKLFEFLRDE HTRTEWDILS NGGVVQEMAH IANGREPGNS 600 VSLLRVNPAN SSQSNMLILQ EGSTDSAASF VVYAPVDLAA MNMVLTGGDP DYVALLPSGF 660 SILPDGQILN RGGAVDVGAS GSLLTVAFQI LVDSAPSAKL SLGSVATVNN LISCTVERIK 720 NSIAGAKHEL * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010657313.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG2 isoform X5 | ||||
Refseq | XP_010657315.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG2 isoform X5 | ||||
Swissprot | Q93V99 | 0.0 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | D7TEM3 | 0.0 | D7TEM3_VITVI; Putative uncharacterized protein | ||||
STRING | VIT_12s0059g02310.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe1G352400.1.p |